WebJun 16, 2024 · color byhet ~disp HC I can see you have two lines drawn to show H-bonds, I guess, but they do not look like good H-bonds. In fact, if you put the mouse over the one on the right (in Chimera, not the image), you can see that it is 4.9 Angstroms long, which is way too long for a reasonable H-bond. http://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html
ChimeraX Tutorial : Coloring by Sequence Conservation
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[chimerax-users] equivalent command for coloring elements specific …
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